Left reads: Input : 550707 Mapped : 483197 (87.7% of input) of these: 119041 (24.6%) have multiple alignments (26967 have >20) Right reads: Input : 550707 Mapped : 467961 (85.0% of input) of these: 116808 (25.0%) have multiple alignments (26914 have >20) 86.4% overall read mapping rate. Aligned pairs: 418990 of these: 104672 (25.0%) have multiple alignments 11891 ( 2.8%) are discordant alignments 73.9% concordant pair alignment rate.