Left reads: Input : 656371 Mapped : 584983 (89.1% of input) of these: 27439 ( 4.7%) have multiple alignments (1274 have >20) Right reads: Input : 656371 Mapped : 561508 (85.5% of input) of these: 26557 ( 4.7%) have multiple alignments (1274 have >20) 87.3% overall read mapping rate. Aligned pairs: 515379 of these: 24134 ( 4.7%) have multiple alignments 9100 ( 1.8%) are discordant alignments 77.1% concordant pair alignment rate.