Left reads: Input : 722625 Mapped : 601370 (83.2% of input) of these: 20160 ( 3.4%) have multiple alignments (1982 have >20) Right reads: Input : 722625 Mapped : 588848 (81.5% of input) of these: 19795 ( 3.4%) have multiple alignments (1982 have >20) 82.4% overall read mapping rate. Aligned pairs: 539776 of these: 18425 ( 3.4%) have multiple alignments 7545 ( 1.4%) are discordant alignments 73.7% concordant pair alignment rate.