Left reads: Input : 712033 Mapped : 646395 (90.8% of input) of these: 101552 (15.7%) have multiple alignments (17944 have >20) Right reads: Input : 712033 Mapped : 608814 (85.5% of input) of these: 98102 (16.1%) have multiple alignments (17944 have >20) 88.1% overall read mapping rate. Aligned pairs: 565496 of these: 89799 (15.9%) have multiple alignments 11177 ( 2.0%) are discordant alignments 77.9% concordant pair alignment rate.