Left reads: Input : 1458403 Mapped : 1218564 (83.6% of input) of these: 65292 ( 5.4%) have multiple alignments (6992 have >20) Right reads: Input : 1458403 Mapped : 1205022 (82.6% of input) of these: 64938 ( 5.4%) have multiple alignments (6991 have >20) 83.1% overall read mapping rate. Aligned pairs: 1086536 of these: 59172 ( 5.4%) have multiple alignments 23140 ( 2.1%) are discordant alignments 72.9% concordant pair alignment rate.