Left reads: Input : 469168 Mapped : 410053 (87.4% of input) of these: 13306 ( 3.2%) have multiple alignments (895 have >20) Right reads: Input : 469168 Mapped : 394414 (84.1% of input) of these: 12932 ( 3.3%) have multiple alignments (895 have >20) 85.7% overall read mapping rate. Aligned pairs: 356487 of these: 11506 ( 3.2%) have multiple alignments 7237 ( 2.0%) are discordant alignments 74.4% concordant pair alignment rate.