Left reads: Input : 154426 Mapped : 119150 (77.2% of input) of these: 6428 ( 5.4%) have multiple alignments (428 have >20) Right reads: Input : 154426 Mapped : 116505 (75.4% of input) of these: 6231 ( 5.3%) have multiple alignments (428 have >20) 76.3% overall read mapping rate. Aligned pairs: 97559 of these: 5327 ( 5.5%) have multiple alignments 2400 ( 2.5%) are discordant alignments 61.6% concordant pair alignment rate.