Left reads: Input : 1245146 Mapped : 1113284 (89.4% of input) of these: 65992 ( 5.9%) have multiple alignments (2075 have >20) Right reads: Input : 1245146 Mapped : 1073246 (86.2% of input) of these: 64484 ( 6.0%) have multiple alignments (2075 have >20) 87.8% overall read mapping rate. Aligned pairs: 985838 of these: 60427 ( 6.1%) have multiple alignments 17877 ( 1.8%) are discordant alignments 77.7% concordant pair alignment rate.