Left reads: Input : 88026 Mapped : 76541 (87.0% of input) of these: 5705 ( 7.5%) have multiple alignments (554 have >20) Right reads: Input : 88026 Mapped : 75012 (85.2% of input) of these: 5635 ( 7.5%) have multiple alignments (554 have >20) Unpaired reads: Input : 1045931 Mapped : 917787 (87.7% of input) of these: 72184 ( 7.9%) have multiple alignments (0 have >20) 87.5% overall read mapping rate. Aligned pairs: 67255 of these: 5120 ( 7.6%) have multiple alignments 1085 ( 1.6%) are discordant alignments 75.2% concordant pair alignment rate.