Left reads: Input : 1136184 Mapped : 972396 (85.6% of input) of these: 223721 (23.0%) have multiple alignments (32394 have >20) Right reads: Input : 1136184 Mapped : 945411 (83.2% of input) of these: 219463 (23.2%) have multiple alignments (32393 have >20) 84.4% overall read mapping rate. Aligned pairs: 857102 of these: 200331 (23.4%) have multiple alignments 13925 ( 1.6%) are discordant alignments 74.2% concordant pair alignment rate.