Left reads: Input : 1114980 Mapped : 987015 (88.5% of input) of these: 93394 ( 9.5%) have multiple alignments (10604 have >20) Right reads: Input : 1114980 Mapped : 966098 (86.6% of input) of these: 92305 ( 9.6%) have multiple alignments (10604 have >20) 87.6% overall read mapping rate. Aligned pairs: 879520 of these: 85646 ( 9.7%) have multiple alignments 17274 ( 2.0%) are discordant alignments 77.3% concordant pair alignment rate.