Left reads: Input : 1189160 Mapped : 1074981 (90.4% of input) of these: 87209 ( 8.1%) have multiple alignments (10270 have >20) Right reads: Input : 1189160 Mapped : 1025968 (86.3% of input) of these: 84730 ( 8.3%) have multiple alignments (10270 have >20) 88.3% overall read mapping rate. Aligned pairs: 950086 of these: 78672 ( 8.3%) have multiple alignments 17726 ( 1.9%) are discordant alignments 78.4% concordant pair alignment rate.