Left reads: Input : 779398 Mapped : 695975 (89.3% of input) of these: 145951 (21.0%) have multiple alignments (33341 have >20) Right reads: Input : 779398 Mapped : 669615 (85.9% of input) of these: 142716 (21.3%) have multiple alignments (33322 have >20) 87.6% overall read mapping rate. Aligned pairs: 611523 of these: 130355 (21.3%) have multiple alignments 15474 ( 2.5%) are discordant alignments 76.5% concordant pair alignment rate.