Left reads: Input : 278906 Mapped : 226799 (81.3% of input) of these: 9265 ( 4.1%) have multiple alignments (150 have >20) Right reads: Input : 278906 Mapped : 229756 (82.4% of input) of these: 9313 ( 4.1%) have multiple alignments (150 have >20) 81.8% overall read mapping rate. Aligned pairs: 197207 of these: 8149 ( 4.1%) have multiple alignments 5500 ( 2.8%) are discordant alignments 68.7% concordant pair alignment rate.