Left reads: Input : 823292 Mapped : 736206 (89.4% of input) of these: 57012 ( 7.7%) have multiple alignments (5590 have >20) Right reads: Input : 823292 Mapped : 720775 (87.5% of input) of these: 56264 ( 7.8%) have multiple alignments (5590 have >20) 88.5% overall read mapping rate. Aligned pairs: 663293 of these: 51979 ( 7.8%) have multiple alignments 12464 ( 1.9%) are discordant alignments 79.1% concordant pair alignment rate.