Left reads: Input : 731543 Mapped : 648413 (88.6% of input) of these: 106218 (16.4%) have multiple alignments (16932 have >20) Right reads: Input : 731543 Mapped : 632835 (86.5% of input) of these: 104948 (16.6%) have multiple alignments (16932 have >20) 87.6% overall read mapping rate. Aligned pairs: 576251 of these: 95734 (16.6%) have multiple alignments 13480 ( 2.3%) are discordant alignments 76.9% concordant pair alignment rate.