Left reads: Input : 378344 Mapped : 307442 (81.3% of input) of these: 15005 ( 4.9%) have multiple alignments (1513 have >20) Right reads: Input : 378344 Mapped : 303986 (80.3% of input) of these: 14842 ( 4.9%) have multiple alignments (1513 have >20) 80.8% overall read mapping rate. Aligned pairs: 259613 of these: 12783 ( 4.9%) have multiple alignments 6632 ( 2.6%) are discordant alignments 66.9% concordant pair alignment rate.