Left reads: Input : 488618 Mapped : 417366 (85.4% of input) of these: 35788 ( 8.6%) have multiple alignments (4918 have >20) Right reads: Input : 488618 Mapped : 393274 (80.5% of input) of these: 34133 ( 8.7%) have multiple alignments (4918 have >20) 83.0% overall read mapping rate. Aligned pairs: 349626 of these: 30610 ( 8.8%) have multiple alignments 7590 ( 2.2%) are discordant alignments 70.0% concordant pair alignment rate.