Left reads: Input : 235972 Mapped : 193979 (82.2% of input) of these: 8800 ( 4.5%) have multiple alignments (134 have >20) Right reads: Input : 235972 Mapped : 193915 (82.2% of input) of these: 8752 ( 4.5%) have multiple alignments (134 have >20) 82.2% overall read mapping rate. Aligned pairs: 169198 of these: 7725 ( 4.6%) have multiple alignments 3377 ( 2.0%) are discordant alignments 70.3% concordant pair alignment rate.