Left reads: Input : 415794 Mapped : 347106 (83.5% of input) of these: 9423 ( 2.7%) have multiple alignments (797 have >20) Right reads: Input : 415794 Mapped : 331108 (79.6% of input) of these: 8950 ( 2.7%) have multiple alignments (797 have >20) 81.6% overall read mapping rate. Aligned pairs: 290927 of these: 7793 ( 2.7%) have multiple alignments 5836 ( 2.0%) are discordant alignments 68.6% concordant pair alignment rate.