Left reads: Input : 1106984 Mapped : 977373 (88.3% of input) of these: 97936 (10.0%) have multiple alignments (10278 have >20) Right reads: Input : 1106984 Mapped : 967407 (87.4% of input) of these: 97867 (10.1%) have multiple alignments (10278 have >20) 87.8% overall read mapping rate. Aligned pairs: 877497 of these: 90398 (10.3%) have multiple alignments 18063 ( 2.1%) are discordant alignments 77.6% concordant pair alignment rate.