Left reads: Input : 1313305 Mapped : 1196574 (91.1% of input) of these: 104386 ( 8.7%) have multiple alignments (13372 have >20) Right reads: Input : 1313305 Mapped : 1140481 (86.8% of input) of these: 101706 ( 8.9%) have multiple alignments (13372 have >20) 89.0% overall read mapping rate. Aligned pairs: 1062225 of these: 94570 ( 8.9%) have multiple alignments 18768 ( 1.8%) are discordant alignments 79.5% concordant pair alignment rate.