Left reads: Input : 520058 Mapped : 445328 (85.6% of input) of these: 11917 ( 2.7%) have multiple alignments (544 have >20) Right reads: Input : 520058 Mapped : 422124 (81.2% of input) of these: 11480 ( 2.7%) have multiple alignments (544 have >20) 83.4% overall read mapping rate. Aligned pairs: 375722 of these: 10064 ( 2.7%) have multiple alignments 6692 ( 1.8%) are discordant alignments 71.0% concordant pair alignment rate.