Left reads: Input : 621705 Mapped : 535050 (86.1% of input) of these: 17578 ( 3.3%) have multiple alignments (718 have >20) Right reads: Input : 621705 Mapped : 526645 (84.7% of input) of these: 17541 ( 3.3%) have multiple alignments (718 have >20) 85.4% overall read mapping rate. Aligned pairs: 472701 of these: 15611 ( 3.3%) have multiple alignments 7962 ( 1.7%) are discordant alignments 74.8% concordant pair alignment rate.