Left reads: Input : 444399 Mapped : 376986 (84.8% of input) of these: 11766 ( 3.1%) have multiple alignments (1400 have >20) Right reads: Input : 444399 Mapped : 363086 (81.7% of input) of these: 11387 ( 3.1%) have multiple alignments (1400 have >20) 83.3% overall read mapping rate. Aligned pairs: 323345 of these: 10096 ( 3.1%) have multiple alignments 5875 ( 1.8%) are discordant alignments 71.4% concordant pair alignment rate.