Left reads: Input : 199784 Mapped : 163617 (81.9% of input) of these: 13314 ( 8.1%) have multiple alignments (1637 have >20) Right reads: Input : 199784 Mapped : 157750 (79.0% of input) of these: 12881 ( 8.2%) have multiple alignments (1637 have >20) 80.4% overall read mapping rate. Aligned pairs: 139246 of these: 11513 ( 8.3%) have multiple alignments 4072 ( 2.9%) are discordant alignments 67.7% concordant pair alignment rate.