Left reads: Input : 653367 Mapped : 577078 (88.3% of input) of these: 37803 ( 6.6%) have multiple alignments (5309 have >20) Right reads: Input : 653367 Mapped : 549422 (84.1% of input) of these: 36629 ( 6.7%) have multiple alignments (5309 have >20) 86.2% overall read mapping rate. Aligned pairs: 502539 of these: 33415 ( 6.6%) have multiple alignments 8909 ( 1.8%) are discordant alignments 75.6% concordant pair alignment rate.