Left reads: Input : 605563 Mapped : 522348 (86.3% of input) of these: 14865 ( 2.8%) have multiple alignments (1211 have >20) Right reads: Input : 605563 Mapped : 504962 (83.4% of input) of these: 14543 ( 2.9%) have multiple alignments (1211 have >20) 84.8% overall read mapping rate. Aligned pairs: 458333 of these: 13491 ( 2.9%) have multiple alignments 6279 ( 1.4%) are discordant alignments 74.7% concordant pair alignment rate.