Left reads: Input : 1078613 Mapped : 941017 (87.2% of input) of these: 419931 (44.6%) have multiple alignments (102823 have >20) Right reads: Input : 1078613 Mapped : 944608 (87.6% of input) of these: 423367 (44.8%) have multiple alignments (102819 have >20) 87.4% overall read mapping rate. Aligned pairs: 847561 of these: 378974 (44.7%) have multiple alignments 31306 ( 3.7%) are discordant alignments 75.7% concordant pair alignment rate.