Left reads: Input : 468753 Mapped : 404043 (86.2% of input) of these: 14461 ( 3.6%) have multiple alignments (1320 have >20) Right reads: Input : 468753 Mapped : 380196 (81.1% of input) of these: 13671 ( 3.6%) have multiple alignments (1320 have >20) 83.7% overall read mapping rate. Aligned pairs: 340916 of these: 12204 ( 3.6%) have multiple alignments 7188 ( 2.1%) are discordant alignments 71.2% concordant pair alignment rate.