Left reads: Input : 1140579 Mapped : 1030671 (90.4% of input) of these: 205682 (20.0%) have multiple alignments (39299 have >20) Right reads: Input : 1140579 Mapped : 999822 (87.7% of input) of these: 202147 (20.2%) have multiple alignments (39299 have >20) 89.0% overall read mapping rate. Aligned pairs: 931282 of these: 186020 (20.0%) have multiple alignments 19466 ( 2.1%) are discordant alignments 79.9% concordant pair alignment rate.