Left reads: Input : 1207731 Mapped : 1024363 (84.8% of input) of these: 283454 (27.7%) have multiple alignments (43728 have >20) Right reads: Input : 1207731 Mapped : 982454 (81.3% of input) of these: 273797 (27.9%) have multiple alignments (43728 have >20) 83.1% overall read mapping rate. Aligned pairs: 887620 of these: 250050 (28.2%) have multiple alignments 19498 ( 2.2%) are discordant alignments 71.9% concordant pair alignment rate.