Left reads: Input : 532636 Mapped : 421638 (79.2% of input) of these: 42450 (10.1%) have multiple alignments (5862 have >20) Right reads: Input : 532636 Mapped : 407294 (76.5% of input) of these: 41274 (10.1%) have multiple alignments (5859 have >20) 77.8% overall read mapping rate. Aligned pairs: 363501 of these: 37116 (10.2%) have multiple alignments 3311 ( 0.9%) are discordant alignments 67.6% concordant pair alignment rate.