Left reads: Input : 351952 Mapped : 294666 (83.7% of input) of these: 12214 ( 4.1%) have multiple alignments (210 have >20) Right reads: Input : 351952 Mapped : 284672 (80.9% of input) of these: 11952 ( 4.2%) have multiple alignments (210 have >20) 82.3% overall read mapping rate. Aligned pairs: 250407 of these: 10537 ( 4.2%) have multiple alignments 5023 ( 2.0%) are discordant alignments 69.7% concordant pair alignment rate.