Left reads: Input : 818955 Mapped : 728423 (88.9% of input) of these: 116981 (16.1%) have multiple alignments (21951 have >20) Right reads: Input : 818955 Mapped : 688982 (84.1% of input) of these: 112454 (16.3%) have multiple alignments (21951 have >20) 86.5% overall read mapping rate. Aligned pairs: 630691 of these: 102709 (16.3%) have multiple alignments 13636 ( 2.2%) are discordant alignments 75.3% concordant pair alignment rate.