Left reads: Input : 413809 Mapped : 329863 (79.7% of input) of these: 14043 ( 4.3%) have multiple alignments (1730 have >20) Right reads: Input : 413809 Mapped : 333553 (80.6% of input) of these: 14127 ( 4.2%) have multiple alignments (1730 have >20) 80.2% overall read mapping rate. Aligned pairs: 278826 of these: 12046 ( 4.3%) have multiple alignments 4685 ( 1.7%) are discordant alignments 66.2% concordant pair alignment rate.