Left reads: Input : 925327 Mapped : 825444 (89.2% of input) of these: 226270 (27.4%) have multiple alignments (42348 have >20) Right reads: Input : 925327 Mapped : 813715 (87.9% of input) of these: 224083 (27.5%) have multiple alignments (42348 have >20) 88.6% overall read mapping rate. Aligned pairs: 748416 of these: 207963 (27.8%) have multiple alignments 9934 ( 1.3%) are discordant alignments 79.8% concordant pair alignment rate.