Left reads: Input : 614845 Mapped : 548020 (89.1% of input) of these: 45252 ( 8.3%) have multiple alignments (9183 have >20) Right reads: Input : 614845 Mapped : 521491 (84.8% of input) of these: 43854 ( 8.4%) have multiple alignments (9181 have >20) 87.0% overall read mapping rate. Aligned pairs: 479900 of these: 40315 ( 8.4%) have multiple alignments 10522 ( 2.2%) are discordant alignments 76.3% concordant pair alignment rate.