Left reads: Input : 1111827 Mapped : 959393 (86.3% of input) of these: 33255 ( 3.5%) have multiple alignments (655 have >20) Right reads: Input : 1111827 Mapped : 917725 (82.5% of input) of these: 32471 ( 3.5%) have multiple alignments (655 have >20) 84.4% overall read mapping rate. Aligned pairs: 814066 of these: 28692 ( 3.5%) have multiple alignments 16856 ( 2.1%) are discordant alignments 71.7% concordant pair alignment rate.