Left reads: Input : 1072395 Mapped : 926879 (86.4% of input) of these: 89653 ( 9.7%) have multiple alignments (10546 have >20) Right reads: Input : 1072395 Mapped : 951342 (88.7% of input) of these: 92132 ( 9.7%) have multiple alignments (10546 have >20) 87.6% overall read mapping rate. Aligned pairs: 844378 of these: 83220 ( 9.9%) have multiple alignments 17365 ( 2.1%) are discordant alignments 77.1% concordant pair alignment rate.