Left reads: Input : 1141117 Mapped : 1025953 (89.9% of input) of these: 129392 (12.6%) have multiple alignments (25167 have >20) Right reads: Input : 1141117 Mapped : 980613 (85.9% of input) of these: 125728 (12.8%) have multiple alignments (25167 have >20) 87.9% overall read mapping rate. Aligned pairs: 902465 of these: 115710 (12.8%) have multiple alignments 20770 ( 2.3%) are discordant alignments 77.3% concordant pair alignment rate.