Left reads: Input : 787486 Mapped : 699670 (88.8% of input) of these: 57317 ( 8.2%) have multiple alignments (11005 have >20) Right reads: Input : 787486 Mapped : 668503 (84.9% of input) of these: 55931 ( 8.4%) have multiple alignments (11005 have >20) 86.9% overall read mapping rate. Aligned pairs: 613968 of these: 51341 ( 8.4%) have multiple alignments 13488 ( 2.2%) are discordant alignments 76.3% concordant pair alignment rate.