Left reads: Input : 984980 Mapped : 845380 (85.8% of input) of these: 80386 ( 9.5%) have multiple alignments (13856 have >20) Right reads: Input : 984980 Mapped : 866019 (87.9% of input) of these: 82274 ( 9.5%) have multiple alignments (13856 have >20) 86.9% overall read mapping rate. Aligned pairs: 766138 of these: 73823 ( 9.6%) have multiple alignments 15465 ( 2.0%) are discordant alignments 76.2% concordant pair alignment rate.