Left reads: Input : 718814 Mapped : 649191 (90.3% of input) of these: 52210 ( 8.0%) have multiple alignments (6656 have >20) Right reads: Input : 718814 Mapped : 625439 (87.0% of input) of these: 51119 ( 8.2%) have multiple alignments (6656 have >20) 88.7% overall read mapping rate. Aligned pairs: 580508 of these: 47503 ( 8.2%) have multiple alignments 10208 ( 1.8%) are discordant alignments 79.3% concordant pair alignment rate.