Left reads: Input : 159607 Mapped : 126029 (79.0% of input) of these: 4904 ( 3.9%) have multiple alignments (469 have >20) Right reads: Input : 159607 Mapped : 127235 (79.7% of input) of these: 4909 ( 3.9%) have multiple alignments (469 have >20) 79.3% overall read mapping rate. Aligned pairs: 106430 of these: 4139 ( 3.9%) have multiple alignments 3191 ( 3.0%) are discordant alignments 64.7% concordant pair alignment rate.