Left reads: Input : 631531 Mapped : 533471 (84.5% of input) of these: 12503 ( 2.3%) have multiple alignments (1605 have >20) Right reads: Input : 631531 Mapped : 534299 (84.6% of input) of these: 12515 ( 2.3%) have multiple alignments (1605 have >20) 84.5% overall read mapping rate. Aligned pairs: 474255 of these: 11394 ( 2.4%) have multiple alignments 6247 ( 1.3%) are discordant alignments 74.1% concordant pair alignment rate.