Left reads: Input : 1125675 Mapped : 1003542 (89.2% of input) of these: 87763 ( 8.7%) have multiple alignments (8867 have >20) Right reads: Input : 1125675 Mapped : 954980 (84.8% of input) of these: 85103 ( 8.9%) have multiple alignments (8867 have >20) 87.0% overall read mapping rate. Aligned pairs: 875521 of these: 79083 ( 9.0%) have multiple alignments 17557 ( 2.0%) are discordant alignments 76.2% concordant pair alignment rate.