Left reads: Input : 1128811 Mapped : 981886 (87.0% of input) of these: 64910 ( 6.6%) have multiple alignments (2919 have >20) Right reads: Input : 1128811 Mapped : 998395 (88.4% of input) of these: 66446 ( 6.7%) have multiple alignments (2919 have >20) 87.7% overall read mapping rate. Aligned pairs: 895843 of these: 60020 ( 6.7%) have multiple alignments 12390 ( 1.4%) are discordant alignments 78.3% concordant pair alignment rate.