Left reads: Input : 259378 Mapped : 216666 (83.5% of input) of these: 13487 ( 6.2%) have multiple alignments (573 have >20) Right reads: Input : 259378 Mapped : 204516 (78.8% of input) of these: 12941 ( 6.3%) have multiple alignments (573 have >20) 81.2% overall read mapping rate. Aligned pairs: 179807 of these: 11445 ( 6.4%) have multiple alignments 5494 ( 3.1%) are discordant alignments 67.2% concordant pair alignment rate.