Left reads: Input : 682307 Mapped : 609018 (89.3% of input) of these: 37027 ( 6.1%) have multiple alignments (2687 have >20) Right reads: Input : 682307 Mapped : 599615 (87.9% of input) of these: 36625 ( 6.1%) have multiple alignments (2687 have >20) 88.6% overall read mapping rate. Aligned pairs: 551389 of these: 33856 ( 6.1%) have multiple alignments 10190 ( 1.8%) are discordant alignments 79.3% concordant pair alignment rate.